Assessment of radiological abnormalities and prediction of lung function with AI-determined lung opacity

You can access figures of the analysis reort in high resolution PDFs and raw Excel tables here. The anaylsis report is available from a Dropbox: note, please, download the analysis report in HTML format and open it in your web browser.

Draft of the manuscript in Word format is available here. Supplementary material is provided as a Word file. Backbone of the rebuttal letter for the first revision is available as a Word file. Backbone of the rebuttal letter for the second round of revision is provided as a Word file. High resolution figures, supplementary figures and an Excel file with supplementary tables are provided in paper folder. A PDF file with submission-ready Supplementary Material is available here.

Please cite the repository and the peer-reviewed publication, when available. The raw data files will be made upon request to the study authors, Dr. Anna Luger, Dr. Christoph Schwabl, Dr. Gerlig Widmann.

The following development packages are required to run the pipeline:

devtools::install_github('PiotrTymoszuk/soucer') ## script sourcing
devtools::install_github('PiotrTymoszuk/ExDA') ## exploratory data analysis and staristical hypothesis testing
devtools::install_github('PiotrTymoszuk/figur') ## management of figures and tables in Rmd documents
devtools::install_github('PiotrTymoszuk/trafo') ## handling of tabular data
devtools::install_github('PiotrTymoszuk/caretExtra') ## performance stats and visualization of caret models
devtools::install_github('PiotrTymoszuk/clustTools') ## used in correspondence analysis
devtools::install_github('PiotrTymoszuk/bootStat') ## boostrap/blocked bootstrap for ROC, inter-rater reliability stats and hypothesis testing
devtools::install_github('PiotrTymoszuk/graphExtra') ## correlation graphs

devtools::install_github('PiotrTymoszuk/somKernels') ## a dependency of `caretExtra`

Source 'exec.R' to launch the entire pipeline:

source('exec.R')

The repository maintainer is Piotr Tymoszuk. Data requests should be addressed to Dr. Christoph Schwabl and Dr. Gerlig Widmann.