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base repository: PhysiCell-Tools/python-scripts
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  • 17 commits
  • 23 files changed
  • 3 contributors

Commits on Feb 3, 2021

  1. Adding two scripts - cell_track_plotter.py, which given a PhysiCell S…

    …VG output produces a still of the cells in the SVG plus a history (track) of previous cell locations based on other SVGs in the directory, and cell_tracker_movie.py, which produces a series of stills (based on PhysiCell SVGs) of cells and their positional history (just like cell_track_plotter.py and composes those stills into a movie.
    johnmetzcar committed Feb 3, 2021
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Commits on Feb 8, 2021

  1. Moved flags to top of functions, changed dpi of output to high quali…

    …ty (256 dpi), added extraction of color from SVGs, commented new code portions, and altered example and usage sectiosn slightly. 95% of the way there - stopping for now.l
    johnmetzcar committed Feb 8, 2021
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Commits on Mar 29, 2021

  1. init

    Randy Heiland committed Mar 29, 2021
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Commits on Mar 30, 2021

  1. repr print for commas

    Randy Heiland committed Mar 30, 2021
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Commits on Mar 31, 2021

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  2. Reorganized scripts that depend on the ECM pyMCDS to their own locati…

    …on. Added additional processing scripts.
    johnmetzcar committed Mar 31, 2021
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Commits on May 28, 2021

  1. Adding two new files - an image processing module and a script that u…

    …ses it. This should let some one specify many different image outputs (using the options). The function generic_plotter is set up to produce images that include up to all these components: cells positions, cell positional history (tracks), a contour plot of oxygen, and a vector field rendered as a quiver plot. There are additional options that are ECM specific as well. The options in the attached file are setup to produce cell positions, cell tracks, and oxygen contours. Documentation and comments for the image proessing modules (as well as a setup.py file) are forthcoming developments on this project.
    johnmetzcar committed May 28, 2021
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Commits on Jun 30, 2021

  1. ID attrib

    Randy Heiland committed Jun 30, 2021
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  3. ID attrib

    Randy Heiland committed Jun 30, 2021
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  4. sequential key

    Randy Heiland committed Jun 30, 2021
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Commits on Aug 21, 2021

  1. hex cells

    Randy Heiland committed Aug 21, 2021
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Commits on Nov 25, 2021

  1. upload file

    rheiland authored Nov 25, 2021
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Commits on Jul 15, 2022

  1. init

    rheiland committed Jul 15, 2022
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Commits on Sep 29, 2022

  1. init

    rheiland committed Sep 29, 2022
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