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base repository: PNNL-CompBio/coderdata
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head repository: PNNL-CompBio/coderdata
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compare: fixes-ym
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  • 4 commits
  • 3 files changed
  • 1 contributor

Commits on Feb 9, 2026

  1. indentation fixes

    fixed indentation of docstring in `dataset.Dataset.split_train_other(...)`
    ymahlich committed Feb 9, 2026
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  2. fixes to dataset.yml

    added qutations to all dataset citations since ":" were interfering with proper parsing in select cases
    ymahlich committed Feb 9, 2026
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  3. fix to mRECIST conversion in prepare_data_for_improve.py

    conversion of mRECIST values needed for some PDX datasets. The formatting function of coderdata returns a DF with the mRECIST column having dtype 'str'. Previously 'floats' where assigned to the values causing a TypeError.
    
    Note the datasets still have a typo of mRESCIST.
    ymahlich committed Feb 9, 2026
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Commits on Feb 11, 2026

  1. cast study name to lower

    for the improve framework to work properly study identifiers in the split file names and the respones have to be of the same case. This fix is implemented such that this is guaranteed
    ymahlich committed Feb 11, 2026
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