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[BUG] Geneformer's infer.py cannot load model checkpoint

bugSomething isn't workingSomething isn't working

Status: Open.

#1391 In NVIDIA/bionemo-framework;

· ngalioto opened on Dec 19, 2025

[BUG] Evo2 Data Parallel Distributed Gradient Test Fails

bugSomething isn't workingSomething isn't working

Status: Open.

#1323 In NVIDIA/bionemo-framework;

· gagank1 opened on Nov 14, 2025

Which evo2 model to select for finetuning

Status: Open.

#1315 In NVIDIA/bionemo-framework;

· MidAtBest opened on Nov 10, 2025

Remove CUDA Sync Workaround in Evo2 Training Script

Status: Open.

#1301 In NVIDIA/bionemo-framework;

· gagank1 opened on Oct 31, 2025

[BUG] Incorrect documentation for Continuous Flow matching augmentation

bugSomething isn't workingSomething isn't working

Status: Open.

#1272 In NVIDIA/bionemo-framework;

· metric-space opened on Oct 24, 2025

[BUG] EVO2 7b_arc_longcontext can't use context parallelism (2 GPUs) for long sequence prediction: shape mismatch

bugSomething isn't workingSomething isn't working

Status: Open.

#1268 In NVIDIA/bionemo-framework;

· Oblynx opened on Oct 22, 2025

[Feature] Tensor + Sequence parallel test coverage for evo2 inference.

Status: Open.

#1243 In NVIDIA/bionemo-framework;

· jstjohn opened on Oct 10, 2025

[BUG] SCDL concatenation does not use raw.X for large file

bugSomething isn't workingSomething isn't working

Status: Open.

#1222 In NVIDIA/bionemo-framework;

· camirr-nv opened on Oct 3, 2025

[Feature] Can I use bionemo framework to extract the embeddings of evo2_40b model？

Status: Open.

#1200 In NVIDIA/bionemo-framework;

· fengxy-03 opened on Sep 28, 2025

[BUG] Geneformer finetuning with peft does not work

bugSomething isn't workingSomething isn't working

Status: Open.

#1171 In NVIDIA/bionemo-framework;

· dorotat-nv opened on Sep 22, 2025

Add a classification / regression finetuning head to evo2

Status: Open.

#1170 In NVIDIA/bionemo-framework;

· MidAtBest opened on Sep 22, 2025

[BUG] ESM-2 Finetune notebook - Pre-trained Model Checkpoint esm2/nv_8m:2.0 not found

bugSomething isn't workingSomething isn't working

Status: Open.

#1155 In NVIDIA/bionemo-framework;

· mrsaso opened on Sep 17, 2025