Commits

Commits on Jul 11, 2025

Commit from GitHub Actions (Create JOSS PDF)
CunliangGeng
committed
300a18a
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add joss paper draft (#331)
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CunliangGeng
and
justinjjvanderhooft
authored
d2032aa
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Commits on Jun 5, 2025

fix mkdoc warnings
CunliangGeng
committed
a7f9da0
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delete webapp readme
CunliangGeng
committed
c4df658
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fix make command release
CunliangGeng
committed
c805285
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Update version to 2.0.0-beta.1

CunliangGeng
authored and
github-actions[bot]
committed
d4f59f3
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Update python version and fix testing issues (#329)
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CunliangGeng
authored
5543557
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Update BiG-SCAPE v2 dependency (#328)
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adraismawur
authored
3f46403
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Commits on Jun 2, 2025

add help info for new make commands
CunliangGeng
committed
f534333
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fix mermaid unsupported feature
CunliangGeng
committed
fbbb792
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Commits on May 26, 2025

docs: add webapp docs page (#327)
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gcroci2
and
CunliangGeng
authored
01b918c
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Commits on Apr 14, 2025

improve make commands and fix some typos (#325)
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CunliangGeng
authored
c6384b0
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Commits on Mar 28, 2025

Update doc for work dir structure (#322)
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CunliangGeng
authored
3aba807
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Commits on Mar 27, 2025

Update readme dev (#320)
CunliangGeng
authored
5f8e853
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Commits on Mar 26, 2025

Update installation instructions to use conda (#319)
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CunliangGeng
and
Copilot
authored
0affa1f
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Commits on Mar 25, 2025

Remove unused methods and files (#318)
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CunliangGeng
authored
c003338
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fix the doc list error
CunliangGeng
committed
3c2d959
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Update quickstart.md
CunliangGeng
committed
4d2185a
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fix make command name for pypi release
CunliangGeng
committed
a746223
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Update version to 2.0.0-alpha.9

CunliangGeng
authored and
github-actions[bot]
committed
e2494f9
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Update scorecard.yml
CunliangGeng
committed
7436294
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Update docs and readme (#317)
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CunliangGeng
authored
9406b92
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Commits on Mar 24, 2025

fix tarfile error on linux Debian - typing
CunliangGeng
committed
c46075f
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fix tarfile error on linux Debian
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CunliangGeng
committed
1bf0c03
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Commits on Mar 21, 2025

Fix jupyter rendering when logging to file
CunliangGeng
committed
5cc58a4
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Commits on Mar 20, 2025

Bump tj-actions/changed-files from 44 to 46 in /.github/workflows (#313)
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dependabot[bot]
authored
47247f8
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Commits on Mar 17, 2025

Local strain mappings (#310)
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rtlortega
and
gcroci2
authored
1fe11ed
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Commits on Feb 28, 2025

Fix: Handle invalid GenBank accessions or missing RefSeq accessions in _resolve_genbank_accession() (#309)
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liannette
and
gcroci2
authored
b66fb72
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Commits on Feb 7, 2025

Fix inconsistent Bigscape version handling (#306)
liannette
authored
db67a41
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Commits on Jan 24, 2025

fix mkdocs warnings (#304)
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CunliangGeng
authored
9ad2d51
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Commits on Jan 23, 2025

Update version to 2.0.0-alpha.8

CunliangGeng
authored and
github-actions[bot]
committed
fb5fa0b
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Commits on Jan 22, 2025

move config template file outside of code folder (#303)
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CunliangGeng
authored
369f198
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remove unused or deprecated code and data (#302)
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CunliangGeng
authored
dd6df26
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Commits on Jan 21, 2025

Update format-typing-check.yml
CunliangGeng
committed
5e82602
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fix ruff errors
CunliangGeng
committed
06e8326
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