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v4 upload page stuff, perl warning fix#744

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teharrison merged 29 commits intomasterMG-RAST/MG-RAST:masterfrom
developMG-RAST/MG-RAST:developCopy head branch name to clipboard
Jul 1, 2015
Merged

v4 upload page stuff, perl warning fix#744
teharrison merged 29 commits intomasterMG-RAST/MG-RAST:masterfrom
developMG-RAST/MG-RAST:developCopy head branch name to clipboard

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teharrison and others added 29 commits June 26, 2015 12:42
add ontology metadata for protein source feature query that has it
patched in v4 upload page
this was not done for Upload.pm and upload.js because they will be replaced by v4 upload pages
removed hardcoded references and replaced by config var
fix perl warnings, dockerfile updates
teharrison added a commit that referenced this pull request Jul 1, 2015
v4 upload page stuff, perl warning fix
@teharrison teharrison merged commit 535e1dd into master Jul 1, 2015
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