bunch of changes#733
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teharrison merged 273 commits intomasterMG-RAST/MG-RAST:masterfrom Jun 26, 2015
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annotation version in matrix resource
added missing semicolon
fixed syntax error in inbox and missing function in analysis.pm
fixed unknown number
develop into api
replaced hard coded urls with appropriate config variables
minor updates
restructure docker files to allow multiple
restructure docker files to allow multiple
develop->api
update develop branch with api branch, got out of synch
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