JAnnot is a Java library to handle biological sequence data. It is underlying GenomeView. It makes sure that files, websites, data bases, etc. can be used by GenomeView. Since the functionality of reading, writing and parsing data has more applications that just GenomeView, JAnnot is available as a separate package.

You can use this from maven with the following dependency.

  <dependency>
	<groupId>net.sf</groupId>
	<artifactId>jannot</artifactId>
	<version>2.0.0</version> 
  </dependency>

and with the following repository

    <repositories>
        <repository>
            <id>artifactory.ewi.tudelft.nl</id>
            <url>https://artifactory.ewi.tudelft.nl/artifactory/libs-release</url>
            <snapshots>
                <enabled>false</enabled>
            </snapshots>
        </repository>
    </repositories>

JAnnot supports several data types:

Wiggle tracks (continuous valued data), with some parsers and an internal representation