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Commit 55f49ee

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chschancpsievertabhilashlakshmanmoutikabdessabourjackparmer
authored
Plotly june2022 (#18)
* Start v4.9.4 release candidate (plotly#1959) * Add crosstalk mapping to computed_mapping (not mapping) when present (plotly#1964) * Follow up to plotly#1952: add crosstalk mapping to computed_mapping (not mapping) when present * use dev version; update news * v4.9.4.1 release candidate (plotly#1965) * v4.9.4.1 release candidate * Reduce some of the warning noise * Reduce some of the warning noise * use dev version * Upgrade to plotly.js 2.0 (plotly#1967) * wip upgrade to plotly.js 2.0 * patch plotly.js source to support phantomjs/shinytest reverts part of plotly/plotly.js#5380 * bump mathjax version * use npm instead of yarn * make geom_bar() default to textposition='none'; approve new vdiffr 0.4 + plotly.js 2.0 baselines * Migrate to vdiffr 1.0 * Use layout.legend.title over layout.annotations to when converting guides for discrete scales * wip migrate to gha * try npm install * setup node * use recommended node version * try mac instead * install phantomjs; various cleanup * intentionally break a visual test * fix * use thematic's approach to testing * bump version * regenerate snapshots * map secrets to env variables * accept new gha baselines * whoops * hmm * approve shinytest baseline * intentionally break a visual test * always upload * revert change; new baselines * Remove the vdiffr dependency and use testthat snaphots directly * More obvious env var naming * more gha details * always upload * new snaps * intentionally break a visual test (again) * Revert "intentionally break a visual test (again)" This reverts commit a4e306c. * Update subplots.R (plotly#1974) To get rid of "Error is get_domains(length(plots), nrows, margin, widths = widths, heights = heights): The sum of the widths and heights arguments must be less than 1. * Better positioning of facet axis annotations (plotly#1975) * Add kaleido() for static image exporting (plotly#1971) * Close plotly#1970: revert plotly.js 2.0 change in default modebar buttons * Add save_image(), a convenience wrapper around kaleido()$transform() (plotly#1981) * Upgrade to plotly.js v2.2.1 (plotly#1982) * Use Plotly.react() to redraw in Shiny if layout.transition is populated (plotly#2001) * Use Plotly.react() to redraw in Shiny if layout.transition is populated * update news * Update to plotly.js v2.5.1 (plotly#2002) * update to plotly.js v2.5.1 * new visual baselines * Closes plotly#2031. ggplot internaly convert `color` to `colour` * Update README.md * update baselines * update URLs * add_area() now uses barpolar instead of area (plotly#2041) * Closes plotly#1872. Implemented to_basic for `geom_function` * 4.10.0 release * Added unit tests. And ran tests using * Conformed with carson's review * Reverted the deletion of _snaps * Added test to check whether the fix works or not. * Added test to check whether the fix works or not. * use dev versioning * Fix "partial argument match" warnings (plotly#1977) * No partial-argument-match warning in ggplotly * Update NEWS.md * Solved the LaTeX2exp error. Closes plotly#2027 (plotly#2030) Co-authored-by: Carson Sievert <cpsievert1@gmail.com> * Revert "Solved the LaTeX2exp error. Closes plotly#2027 (plotly#2030)" This reverts commit aeaecd6. * Add ggalluvial support (plotly#2061) Co-authored-by: Carson Sievert <cpsievert1@gmail.com> Co-authored-by: Abdessabour Moutik <abds.papa@gmail.com> * Fix ordering of lines in stat_ecdf() (plotly#2065) * Handle geom_tile() with no fill aesthetic (plotly#2063) * More careful joining of group columns (plotly#2064) * Avoid with() to better account for missing tickvals/ticktext (plotly#2062) * Test discrete-ness of fill after statistics have been calculated (plotly#2066) * Announce snapshot files when visual testing isn't enabled so they won't get deleted * Respect guide(aes = 'none') when constructing legend entries (plotly#2067) * Add 'plotly_selecting' to acceptable 'on' events (plotly#1280) * Use faster versions of system.file()/packageVersion()/is_installed() (plotly#2072) * Bump plotly.js to 2.11.1 (plotly#2096) * approve new visual baselines * Use rlang::local_options() in test * new shinytest baselines; avoid rlang altogether * plotly.js fix bug when crosstalk filter keys are null (plotly#2087) * transition `tidyr::gather_` -> `tidyr::pivot_longer` (plotly#2125) * transition `tidyr::gather_` -> `tidyr::pivot_longer` * add `NEWS` entry * Replace `is.na` with `rlang::is_na` in `map_color()` (plotly#2131) * roxygenize * Support renderValue within iframe * Add yaml for auto-P.R./fork updating; RS-2202 * [pull] master from ropensci:master (#2) * New version of scales no longer 'spans the gamut' of a qualitative color palette * reduce Reduce() for merging lists use do.call() instead to avoid quadratic complexity of growing lists * ensure_one(): reduce noise if attrs are NULL ignore NULL values * ggplotly: fix Xaxis anchor if the last row incomplete attach X axis to the last non-empty row in a column * stylistic changes * validate new visual baselines * Doesn't seem like we need to handle yaxis being a factor and if we do, it likely needs a different fix * update shinytest baselines * ugh maintaining shinytest tests for htmlwidgets is a real pain * update sf baselines * go back to using ggplotly() to prepare the widget for shiny rendering * the extra call to plotly_build() forces more computation then necessary and fixes plotly#1569 * Generation of non-intercept data in hline/vline should respect coord_flip(), closes plotly#1519 * update news; fix typo * Account for new changes in ggplot2's internal API, fixes plotly#1561 * Break values of positional scales have moved from to * Text labels of positional scales have moved from to * sf graticule degree labels are now quoted? * include braces * gsub * moar braces * new sf baselines * update news * upgrade to plotly.js v1.49.0 * upgrade to plotly.js v1.49.2 * upgrade to plotly.js v1.49.4 * update baseline * update shinytest baseline * make a deep copy of x.layout.width/x.layout.height for use in the resize method, closes plotly#1553 * Wrap user-supplied expression in evalq(), closes plotly#1528 * Use shiny::installExprFunction to register debug hooks * Asynchronously register plot events * Revert "Merge pull request plotly#1539 from ropensci/renderWidgetPrep" This reverts commit d416cea, reversing changes made to d11bb5a. * no need to be making deep copies * Improvements to algorithm for attaching key attribute for shiny's event data, fixes plotly#1610 * Account for pointNumbers * Do nothing if we don't recognize the case * When pointNumber is a constant, relay it as such * handle the 3 cases separately * use idx instead of i * update news * Call setInputValue only if it's defined, closes plotly#1624 * Revert "Revert "Merge pull request plotly#1539 from ropensci/renderWidgetPrep"" This reverts commit 2856731. * pass along a quoted expr that calls func() * Revert "go back to using ggplotly() to prepare the widget for shiny rendering" This reverts commit a0fa68f. * update news * verify_webgl() shouldn't warn about types that are already gl, closes plotly#1569 * fix test * Do not create structure with NULL to remove warnings * Fix management of environments in renderPlotly(), fixes plotly#1639 Both assignment and evaluation of func() should happen in the local environment * Add test to prove plotly#1299 fix * proposed change to avoid peeking at 'grid' unit internals * improve previous commit * refactor Paul's unit type commits from plotly#1646 * Some CRAN builds don't have pandoc * plot_mapbox() shouldn't force a scattermapbox trace type, closes plotly#1608 * fix R CMD check notes * r-devel apparently doesn't yet have grid::unitType() * remove outdated travis config * Validate changes visual baselines due to changes in R3.6's new RNG method * Add support for new plotly_sunburstclick event, closes plotly#1648 * validate new shinytest baselines * update news * fix silly mistake from 3cbccfc * document * test expectation should account for changes in the default color palette on r-devel * improve the aforementioned test example and add a visual test * Ignore calculated aesthetics that match specified aesthestics After tidyverse/ggplot2@10fa0014, it's possible for calculated aes to exist for all default_aes * fix broken link raster2uri and improve the description * cran hyperlinks must be https * fix roxygen warning * In contrast to attr(x, unit), the new grid::unitType() function always return a vector the same length as it's input * bump to release version; submit to CRAN * Respect sf's plot12 graticule attribute when building axis ticks, fixes plotly#1673 * Remove missing values in ticktext/tickvals As discussed in tidyverse/ggplot2#3566 (comment), it's now possible for the ggplot2 labels/positions to contains missing values, and we should be able to simply ignore them * link to comment * remove outdated/bad test expectation...the visual baseline covers it * Don't assume sf geometry is always accessible via [['geometry']], fixes plotly#1659 * validate baselines * update news * update to plotly.js 1.52.2 * new baselines * Add image and treemap visual tests. Also, ensure treemap's stroke reflects the paper's bgcolor * Add Object.setPrototypeOf polyfill for shinytest and update shinytest json baseline * Add add_image() for easier rendering of image traces via raster objects * Bump version, update news, document, add unit test for add_image() * roxygen escapes % now * Only call locale_dependency() for locales not included with standard bundle, closes plotly#1686 * CRAN submission * plot_mapbox() should default to scattermapbox unless z is present, fixes plotly#1707 * add visual test for plotly#1674 * update poor test expectations that assume stringsAsFactors defaults to TRUE * bump version; update news * update visual tests * remove rnaturalearth dependency in tests Co-authored-by: Carson Sievert <cpsievert1@gmail.com> Co-authored-by: Alexey Stukalov <astukalov@gmail.com> Co-authored-by: Wim <wfjvdham@gmail.com> Co-authored-by: Paul Murrell <paul@stat.auckland.ac.nz> * Add back missing layout attribute * Pass element instead of ID * VIS-992: add test, use rhtmlBuildUtils (#15) * Initial commit * Remove prepush * Final line for plotly.yml * Re-add lib * Refactor * Create test * Specify rhtmlBuildUtils version * Remove preinstall script * Delete package-lock.json * Update documentation * Update documentation and remove library * Restore files * Restore file * Update build files * VIS-933: add rhtmlwidget-status attribute (#16) * Test callback * Update compiled files * Add rhtmlwidget-status attribute * wording change * VIS-1064: fix PPT exporting issue (#17) * Candidate fix * Bump version * Update widgetdefinition.js and build Co-authored-by: Carson Sievert <cpsievert1@gmail.com> Co-authored-by: Abhilash Lakshman <46469834+abhilashlakshman@users.noreply.github.com> Co-authored-by: Abdessabour Moutik <abds.papa@gmail.com> Co-authored-by: Jack Parmer <jparmer09@gmail.com> Co-authored-by: bersbersbers <12128514+bersbersbers@users.noreply.github.com> Co-authored-by: casperhart <39182232+casperhart@users.noreply.github.com> Co-authored-by: Simon P. Couch <simonpatrickcouch@gmail.com> Co-authored-by: Paul Hoffman <mojaveazure@users.noreply.github.com> Co-authored-by: Jeffrey Shen <jeffrey.shen@displayr.com> Co-authored-by: flipDevTools <opensource@displayr.com> Co-authored-by: pull[bot] <39814207+pull[bot]@users.noreply.github.com> Co-authored-by: Alexey Stukalov <astukalov@gmail.com> Co-authored-by: Wim <wfjvdham@gmail.com> Co-authored-by: Paul Murrell <paul@stat.auckland.ac.nz> Co-authored-by: Justin Yap <JustinCCYap@users.noreply.github.com>
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‎.Rbuildignore

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README.Rmd
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abbvie.R
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^\.httr-oauth$
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^\.github$

‎.github/.gitignore

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*.html

‎.github/workflows/R-CMD-check.yaml

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# NOTE: This workflow is overkill for most R packages
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# check-standard.yaml is likely a better choice
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# usethis::use_github_action("check-standard") will install it.
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#
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# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
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# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
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on:
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push:
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branches:
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- main
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- master
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pull_request:
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branches:
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- main
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- master
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name: R-CMD-check
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jobs:
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R-CMD-check:
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runs-on: ${{ matrix.config.os }}
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name: ${{ matrix.config.os }} (${{ matrix.config.r }})
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strategy:
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fail-fast: false
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matrix:
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config:
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- {os: macOS-latest, r: 'release', visual_tests: true, node: "14.x", shinytest: true}
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- {os: windows-latest, r: 'release'}
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#- {os: windows-latest, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/latest"}
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- {os: ubuntu-18.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: "R/4.1.0 (ubuntu-18.04) R (4.1.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
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# vdiffr & shinytest only runs on linux r-release since the results aren't cross-platform
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- {os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
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- {os: ubuntu-18.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
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- {os: ubuntu-18.04, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
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- {os: ubuntu-18.04, r: '3.5', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
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env:
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RSPM: ${{ matrix.config.rspm }}
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VISUAL_TESTS: ${{ matrix.config.visual_tests }}
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SHINYTEST: ${{ matrix.config.shinytest }}
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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MAPBOX_TOKEN: ${{ secrets.MAPBOX_TOKEN }}
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plotly_username: ${{ secrets.PLOTLY_USERNAME }}
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plotly_api_key: ${{ secrets.PLOTLY_API_KEY }}
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/setup-r@v1
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id: install-r
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with:
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r-version: ${{ matrix.config.r }}
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http-user-agent: ${{ matrix.config.http-user-agent }}
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- uses: r-lib/actions/setup-pandoc@v1
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- name: Install pak and query dependencies
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run: |
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install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
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saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
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shell: Rscript {0}
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- name: Restore R package cache
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uses: actions/cache@v2
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with:
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path: |
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${{ env.R_LIBS_USER }}/*
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!${{ env.R_LIBS_USER }}/pak
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key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
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restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-
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- name: Install Linux sysdeps
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if: runner.os == 'Linux'
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run: |
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pak::local_system_requirements(execute = TRUE)
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pak::pkg_system_requirements("rcmdcheck", execute = TRUE)
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shell: Rscript {0}
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- name: Install dependencies
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run: |
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if (Sys.info()[['sysname']] == 'Darwin') options(pkgType = 'mac.binary')
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pak::local_install_dev_deps(upgrade = FALSE)
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pak::pkg_install("rcmdcheck")
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shell: Rscript {0}
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- name: Set up Python 3.8
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uses: actions/setup-python@v2
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with:
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python-version: 3.8
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- name: Install kaleido
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if: matrix.config.visual_tests == true
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run: |
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sudo chown -R $UID $CONDA # https://github.com/nextstrain/conda/issues/5
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Rscript -e "reticulate::install_miniconda()"
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Rscript -e "reticulate::conda_install('r-reticulate', 'python-kaleido')"
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Rscript -e "reticulate::conda_install('r-reticulate', 'plotly', channel = 'plotly')"
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Rscript -e "reticulate::use_miniconda('r-reticulate')"
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- name: Install shinytest deps
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if: matrix.config.shinytest == true
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run: |
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Rscript -e 'shinytest::installDependencies()'
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R CMD install .
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shell: bash
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# Run test() before R CMD check since, for some reason, rcmdcheck::rcmdcheck() skips vdiffr tests
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- name: Run Tests
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run: |
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options(crayon.enabled = TRUE, testthat.progress.max_fails=1000)
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if (!require(devtools)) pak::pak("devtools")
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if (!require(reshape2)) pak::pak("reshape2")
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res <- devtools::test()
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df <- as.data.frame(res)
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if (sum(df$failed) > 0 || any(df$error)) stop("GHA CI tests failed")
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shell: Rscript {0}
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# Upload the whole pkg since tests where run with devtools::test()
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- name: Upload check results
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if: always()
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uses: actions/upload-artifact@master
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with:
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name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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path: ./
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# Run check with --no-tests since we ran them abve
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- name: Check
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run: |
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options(crayon.enabled = TRUE)
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rcmdcheck::rcmdcheck(args = c("--no-tests", "--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
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shell: Rscript {0}
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#- name: Show testthat output
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# if: always()
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# run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
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# shell: bash
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- name: Don't use tar from old Rtools to store the cache
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if: ${{ runner.os == 'Windows' && startsWith(steps.install-r.outputs.installed-r-version, '3.6' ) }}
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shell: bash
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run: echo "C:/Program Files/Git/usr/bin" >> $GITHUB_PATH

‎.gitignore

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.httr-oauth
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tests/testthat/Rplots.pdf
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inst/examples/shiny/event_data/tests/shinytest/mytest-current/

‎DESCRIPTION

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Package: plotly
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Title: Create Interactive Web Graphics via 'plotly.js'
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Version: 4.9.4.3
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Version: 4.10.0.9001
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Authors@R: c(person("Carson", "Sievert", role = c("aut", "cre"),
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email = "cpsievert1@gmail.com", comment = c(ORCID = "0000-0002-4958-2844")),
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person("Chris", "Parmer", role = "aut",
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person("Plotly Technologies Inc.", role = "cph"))
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License: MIT + file LICENSE
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Description: Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.
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URL: https://plotly-r.com, https://github.com/ropensci/plotly#readme, https://plotly.com/r/
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BugReports: https://github.com/ropensci/plotly/issues
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URL: https://plotly-r.com, https://github.com/plotly/plotly.R, https://plotly.com/r/
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BugReports: https://github.com/plotly/plotly.R/issues
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Depends:
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R (>= 3.2.0),
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ggplot2 (>= 3.0.0)
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base64enc,
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htmltools (>= 0.3.6),
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htmlwidgets (>= 1.5.2.9001),
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tidyr,
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tidyr (>= 1.0.0),
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RColorBrewer,
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dplyr,
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vctrs,
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hexbin,
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ggthemes,
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GGally,
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ggalluvial,
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testthat,
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knitr,
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devtools,
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shiny (>= 1.1.0),
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shinytest (>= 1.3.0),
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curl,
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rmarkdown,
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vdiffr,
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Cairo,
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broom,
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webshot,
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listviewer,
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dendextend,
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sf,
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maptools,
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rgeos,
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sf,
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png,
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IRdisplay,
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processx,
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plotlyGeoAssets,
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forcats,
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palmerpenguins
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palmerpenguins,
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rversions,
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reticulate
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LazyData: true
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RoxygenNote: 7.1.2
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Encoding: UTF-8
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Roxygen: list(markdown = TRUE)
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Remotes:
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rstudio/thematic,
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Displayr/htmlwidgets

‎NAMESPACE

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S3method(print,api_grid)
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S3method(print,api_grid_local)
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S3method(print,api_plot)
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S3method(print,kaleidoScope)
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S3method(print,plotly_data)
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S3method(to_basic,GeomAbline)
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S3method(to_basic,GeomAlluvium)
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S3method(to_basic,GeomAnnotationMap)
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S3method(to_basic,GeomArea)
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S3method(to_basic,GeomBoxplot)
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S3method(to_basic,GeomDotplot)
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S3method(to_basic,GeomErrorbar)
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S3method(to_basic,GeomErrorbarh)
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S3method(to_basic,GeomFunction)
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S3method(to_basic,GeomHex)
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S3method(to_basic,GeomHline)
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S3method(to_basic,GeomJitter)
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S3method(to_basic,GeomSmooth)
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S3method(to_basic,GeomSpoke)
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S3method(to_basic,GeomStep)
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S3method(to_basic,GeomStratum)
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S3method(to_basic,GeomTile)
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S3method(to_basic,GeomViolin)
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S3method(to_basic,GeomVline)
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export(hide_legend)
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export(highlight)
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export(highlight_key)
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export(kaleido)
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export(knit_print.api_grid)
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export(knit_print.api_grid_local)
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export(knit_print.api_plot)
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export(rename)
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export(rename_)
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export(renderPlotly)
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export(save_image)
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export(schema)
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export(select)
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export(select_)
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importFrom(rlang,"!!!")
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importFrom(rlang,"!!")
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importFrom(rlang,eval_tidy)
260+
importFrom(rlang,is_na)
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importFrom(stats,complete.cases)
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importFrom(stats,is.leaf)
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importFrom(stats,quantile)
@@ -260,6 +267,7 @@ importFrom(tidyr,unnest)
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importFrom(tools,file_ext)
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importFrom(tools,file_path_sans_ext)
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importFrom(utils,browseURL)
270+
importFrom(utils,capture.output)
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importFrom(utils,data)
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importFrom(utils,file.edit)
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importFrom(utils,getFromNamespace)

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