This project unites [Astro]nomy and [Path]ology concepts, emphasizing spatial biology to advance cancer immunotherapy research. We develop tools aimed at uncovering novel biomarkers and new biological mechanisms.
AstroPath
AstroPath Platform Code
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- ConvertIm3 Public
The executable was written by Richard Wilton to extract the bitmap and metadata information from the akoya im3 image files.ConvertIm3Path is a powershell code, added by Benjamin Green and is a soft wrapper for the executable to run on the sample level and is dependent on the images being in the AstropathPipeline directory format. ConvertIm3Cohor…
AstroPathJHU/ConvertIm3’s past year of commit activity - KoMbine Public
AstroPathJHU/KoMbine’s past year of commit activity - DONUTS Public
AstroPathJHU/DONUTS’s past year of commit activity - AstroID Public
A package for pulling clinical data from an AstroID REDCap build and pushing it into a MSSQL database
AstroPathJHU/AstroID’s past year of commit activity - AstroPathPipeline Public
The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.
AstroPathJHU/AstroPathPipeline’s past year of commit activity - .github Public
AstroPathJHU/.github’s past year of commit activity - SciScript-Python Public Forked from sciserver/SciScript-Python
Python libraries for SciScript, Jupyter Notebooks
AstroPathJHU/SciScript-Python’s past year of commit activity
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