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Commits on Mar 13, 2019

• fix bug in reading single decoy rep*tra* file

  

  Chengxin Zhang

  committed
  00377fa

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• uniprot api

  

  Chengxin Zhang

  committed
  e6263e2

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Commits on Mar 12, 2019

• read real distance map

  

  Chengxin Zhang

  committed
  dab1866

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Commits on Mar 11, 2019

• distance_pdb

  

  Zhang

  committed
  25165fe

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Commits on Feb 21, 2019

• fix pdbbundle molecule type

  

  Chengxin Zhang

  committed
  4f50518

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• choose different molecule type

  

  Chengxin Zhang

  committed
  44206f9

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• Merge branch 'master' of https://github.com/kad-ecoli/python_scripts

  kad-ecoli

  committed
  26f7074

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• suport nucleic acid

  

  Chengxin Zhang

  committed
  a836b07

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• fix bug in negative residue index

  

  Chengxin Zhang

  committed
  49b8685

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• fix empty contact map bug

  

  Chengxin Zhang

  committed
  cbaeff5

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Commits on Nov 26, 2018

• fix undefined GO term issue in create_UNIPROT_GOterms.py

  kad-ecoli

  committed
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Commits on Jul 29, 2018

• add -infmt=pdb for contact_pdb

  kad-ecoli

  committed
  ce525a3

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• fix bug in argument parsing and add -outfmt=lnat in contact_pdb

  kad-ecoli

  committed
  001594d

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Commits on Jul 28, 2018

• contact_pdb can read gzip file

  kad-ecoli

  committed
  a40029c

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Commits on Jul 21, 2018

• contact_pdb can read from stdin

  

  Chengxin Zhang

  committed
  a389ac6

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Commits on May 10, 2018

• batch retrieve GO term annotations

  

  Chengxin Zhang

  committed
  f1e7e9f

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Commits on Apr 8, 2018

• fix bug in pgen template sequence

  

  Chengxin Zhang

  committed
  61632d6

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• fix template residue index in SPX

  kad-ecoli

  committed
  c0489bd

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• fix sequence bug in WWW

  kad-ecoli

  committed
  534c188

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• fix bug when > is in middle of name

  kad-ecoli

  committed
  0c549c6

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• add more maxSAS parameters

  kad-ecoli

  committed
  6052f6a

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Commits on Jan 12, 2018

• make doc of PredNc kess confusing

  kad-ecoli

  committed
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Commits on Jan 10, 2018

• add upper and lower bound for PredNc.py

  kad-ecoli

  committed
  1e20fb7

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Commits on Jan 3, 2018

• by default, do not use solv for contact num pred

  kad-ecoli

  committed
  6d7b579

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Commits on Jan 2, 2018

• also print L

  kad-ecoli

  committed
  b273397

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• contact number estimation

  kad-ecoli

  committed
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• pdb2sart print solvent accessibility

  kad-ecoli

  committed
  5b2392e

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Commits on Dec 30, 2017

• -outfmt=stat by default

  kad-ecoli

  committed
  02c9a69

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Commits on Nov 23, 2017

• residue number by secondary structure type

  kad-ecoli

  committed
  aa60280

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• fix docstring

  kad-ecoli

  committed
  caf34a3

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• contact number calculation

  kad-ecoli

  committed
  54390bc

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Commits on Nov 18, 2017

• fix critical bug in alignment.fasta generation

  kad-ecoli

  committed
  58e6438

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• read from stdin

  kad-ecoli

  committed
  fca87f3

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Commits on Nov 17, 2017

• split multimodel PDB

  kad-ecoli

  committed
  2b3602e

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Commits on Sep 24, 2017

• grep-GO and grep-uniprot consider word boundary in regexp

  kad-ecoli

  committed
  7a10278

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