[WIP] Dev zdcrec. New format for RecEvent#6224

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cortesep wants to merge 782 commits intoAliceO2Group:devfrom

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make sure MFT digi2raw creates 1 file per link if requested

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Full system test: Adapt to some renaming in DD

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TOF channel calibration using cosmics
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Possibility to calibrate with 1 slot valid till infinity and update when ready
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Possibility to retry to calibrate with a lower frequency than the update interval
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GPU: Add a cache for CUDA runtime compilation results

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GPU: Fix headers for CUDA RTC compilation

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path for collisioncontext can be set via NameConf.mDirCollContext

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Do not start CTFwriter if detectors mask is empty

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PWGHF: update QA task for efficiency (#6023)
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DPL: improve signaling logic
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Check/enforce that all links got AddData call in every IR it processed
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[EMCAL-699] Add RCU trailer also for links without payload
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GPU: AMD HIP creates a cache variable, overriding our settings if not FORCEd

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channel offsets in reconstruction (#6115)
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Add MFT alignable volume functions (#5974)
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throw exception with message instead of cout + exit

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Add MaxDXYIni cut on DCAFitterN seed XY DCA

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FIT: Large FITRaw upgrade (#6152)
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Add cosmics to RecoContainer and InputHelper

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DPL: implement ability for devices to watch driver messages

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Compatibility to boost 1.76

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fix workflow option (#6142)

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Move SHA1 algorithm in 3rdparty header only library

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[MID] Executable to compare the User Logic raw data with the common logic one (#6144)

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PVertexing: optional afterburner for track-vertex reattachment
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GPU: Check that define for HIP warp size is correct

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GPU: Add define GPUCA_GPUCODE_HOSTONLY: disables inclusion of GPU device-code headers and duplacte compilation of default kernels in host-only source files where they are not used

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GPU: Use SHA1 hashes to check if RTC cache is outdated

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GPU: Prepend some more macros with GPUCA_

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GPU: RTC works in combination with non-constant memory

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GPU: Use dummy member shadowing constexpr-replaced members to maintain same memory layout

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DPL Analysis: store created histograms in unique_ptrs (#6159)

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Fix in VertexTrackMatcher ITS track time treatment

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Add tab detection to CI tests. (#6099)
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Use correct type in sim duplication tool
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Add default c-tors to PVertex debug dump objects

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Cleaning and updates of tutorials (#6158)

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Fix comment

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Changes for Root v6-24 (#6166)
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GPU: Split host and GPU code during CUDA compilation, mostly for faster compilation

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GPU: Automatically disable device timers if not supported by OpenCL platform

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GPU: Bugfix for OpenCL1 processing / GPU processing with track merging on host

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New MFT Power cables and services update

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PWGHF: Implementation of Lc --> K0s+p (#5257)
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updates of the O2 Analysis Framework shall from now on be documented at
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GPU: Generate GPU kernel definitions dynamically, and don't precompile them in the RTC source

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GPU: Move some more functions from GPUReconstructionCUDAKernels.cu to other files

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GPU: The CMake OpenMP module apparently doesn't know about CUDA, so it is not adding the openmp flat

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GPU: Add option to run parallel per-kernel RTC compilation

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GPU: If we have a specialization for a kernel, we can skip compiling the base one to save some compile time

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Fix filter (#6171)

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[MFT] Standalone vertex matching (time-bracket) & AOD table production (#6120)
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Add FT0 Channels to RecPointReader and RecContainer

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Fix in composition of ITS/MFT dictionary name

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Analysis: remove deprecated HistHelpers (#6176)

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Fix HMPID stream decoder workflow writing output at end of run not at endOfStream

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Log statistics on track to vertex assignment

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Add detection of trailing whitespaces.

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Add missing ROOT dictionary (not really needed, but fixes warning)

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Software event filtering for Run 3 pp (#5967)

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Cluster finder for ITS3 (#6129)
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[MFT] Marking reconstructed tracks on the MC AOD table

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Adjusting the muon iterator tutorial analysis task (#6143)
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Analysis/Task/PWGDQ: update v0selector (#6160)
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[MCH] added HB packet validity check in UL decoder (#6192)

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[MCH] improved time frame grouping in CRU page reader (#6193)

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Fix for a typo in FT0 RecPointReaderSpec (from N.Burmasov)

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CCDB populator will match payload and wrapper according to DataDescription (#6150)
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[MCH] prepare setup for run3 (#6207)

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Dropping old / obsolete / unmaintained code
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FT0 correct treatment of missing TF

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correct treatment of missing TF in HMPID DataDecoderSpec

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DPL: use Resource Manager to optimize shared memory usage (#6211)
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DPL: hotfix for resource manager (#6215)
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sim_challenge: fix in VZ generation and ITS reco options in pp

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Fix in ITS digits->raw conversion
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saving tracks from workflow to jsons

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implementation of active watching folder for files with tracks

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TOF: fix retrieval of integer output buffer CompressorTask.cxx (#6194)
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Introducing simulation as a service
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Improve space checker report. (#6219)
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Reworking event structure
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minor fixes in TPC CalArray and TPC/qc PID

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[O2-2018] Drop support for Microsoft GSL v2 (#6075)
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added ROF to MCH
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CLANG format

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digits reader from dev

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remove comments from MID

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remove outcommented timing related information

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fixed code checker complaints

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Update MCHDigitWriterSpec.h

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Further updates of tutorials (#6191)
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DPL: properly handle SIGTERM (#6218)

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DPL: add test for ability to create transport (#6212)

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Corrected compilation bug
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o2-sim: Improve communication between primary server and transport workers
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[OCTRL-355] AliECS dump: Use global channel space for raw channels

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AliECS: reduce the resource requirements to the minimum
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AliECS dump: support RPMs generated the new way

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AliECS dump: parametrize --resources-monitoring

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Create README.md
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Event selection adapted to Run2 and Run3 MC (#6220)

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New ZDC rec event format
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missing includes to compile with gcc11

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GPU configKeyValues: support nested settings with '_' syntax as separator

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Nested the lightweight and heavyright runtime settings of the GPU display in GPUSettingsDisplay

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GPU: Option renaming, and grouping of TRD and TPC options

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Do not use printf (#6232)

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moved Calib objects to DataFormats; Reimplement clusters as obj. with cluster properties+ref to separate list of CluElements used to (re-)calculate E, position etc. Re-implemented cluster unfolding…
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Suppress leftover PHOSCalib directory [fix for PR6187]

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fix in CCDB populator documentation

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BadChannelsMap renamed

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Remove fake IB HalfStave and Module volumes (#6011)
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rANS: allow encoders/decoders with empty dictionaries (#6202)
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GPU: Add separate config structure for RTC, and check whether RTC options have changed for RTC cache

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Update histogram registry spec to make it more distinguishable (#6238)

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DPL Analysis: Handle unassigned (-1) index in grouping (#6225)

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Have to use FATAL message to catch failure condition in workflow unit tests
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simlogcheck: cat problematic files
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Fixes in doxygen: (#6237)
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Fix: QED interaction sampler was using default BC scheme

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Fix parsing for InputSpec with DataOrigin only (#6241)
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PWGHF: implement event selection in track-index skim creator (#6016)
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[TRD] remove tabs and trailing whitespaces

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GPU: Add more missing ROOT dictionaries

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Grep logfile always as ascii file not as binary in jobutils.sh

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[EMCAL-518,EMCAL-694] Split digitizer into SDigitizer and FEEDigitizer

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DPL: improve workflow validation (#6256)
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More fixes in doxygen: (#6262)
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GPU: Fix MS_GSL in CMake for GPU standaloneb benchmark after migration to v3

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DPL Foundation: add C++20 version for counting

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DPL Foundation: add helper to apply functions to member of a struct
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DPL Foundation: do not use a tuple to store task fields.
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PWGHF: Fix track selection in index skimming (#6255)

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MFT Noise calibration (#6230)
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Small updates
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clang format
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Added python tool to create html representation of O2 data model (#6243)

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DPL Analysis: send the size of the tables as metric (#6217)

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Headers: remove unneeded traits (#6247)
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DPL: improve shared memory handling in AOD (#6240)
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MCH: introduce RoFRecord in decoder (#6109)
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DPL: rationalise parent-child communication (#6268)

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Switch MC on by default (#6271)

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Add flag to check if a track has TOF (#6266)

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support unassigned indices (#6260)

jgrosseo
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RawFileWriter can handle empty HBF fillers of >8KB

shahor02
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Fix treatment of multiple raw FMQ channels

shahor02
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DetID: add nameToID method

shahor02
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dcs-config-proxy and sample consumer workflow

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DPL DDS: use id rather than name for task id (#6276)
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ktf
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DPL: cleanup AODReaderHelpers.cxx (#6283)
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ktf
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o2sim: Cleanup tmp files
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sawenzel
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Proper termination of detached thread
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sawenzel
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Treat FLUKA_VMC like a real plugin
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sawenzel
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use configurable parameters for MCH tracking

pillot
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fix trailing whitespaces

pillot
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DPL: reduce template instanciation (#6290)

ktf
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Some corrections from Ruben
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DPL: avoid dependency on boost for trivial stuff (#6289)

ktf
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documentation of data model. renaming unassigned tracks table (#6284)

jgrosseo
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PWGHF: Add single particle distribution (#5556)
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njacazio
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Drop o2::byte (#6253)
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ktf
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Fixing typo in VarManager (#6273)
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Add prompt-feeddown histo and fix LcpKpi selector (#5889)

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Fix in requesting FT0 data for PVertex validation

shahor02
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Avoid inclusion of Vc/Vc in RandomRing
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sawenzel
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Add back cerrno (#6300)

ktf
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pythia8 generator flag will start empty pythia8 config, make sure you configure it

preghenella
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Example pythia8 configuration for p-Pb

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DPL Analysis: fix AnalysisTask test after renaming data model table (#6301)

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DPL Analysis: avoid instantiating HistFactory functions for each TU (#6302)
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add tof file proxy for data w/o rdh

noferini
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Fix in SVertices attachment to RecoContainer

shahor02
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use track PID instead of fixed pion in tof correction

shahor02
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Full system test: disable shm-monitor for StfBuilder as is done automatically for the DPL processes

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DPL Analysis: fix bug in unassigned grouping (#6275)

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DPL: drop try catch

ktf
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DPL: stop at first workflow in the pipe which fails
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DPL: hide InputSpan from common headers
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ktf
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o2-sim: Improved signal handling
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CcdbApi: disable token checking on MacOS
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sawenzel
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o2sim: Harmonize socket names; fix rm command

sawenzel
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Digits reader
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Do not use FairMCApplication::MisalignGeometry
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shahor02
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Fix: gpu::bitset prints bits from left to right (like std::bitser)

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Improve det.list to mask_t conversion

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Add standard alignment object path to NameConf

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Modifications for alignment application to geometry
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Sample macros for dummy alignment objects uploading
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Updates for dimuon and Electron-Muon analysis (#6296)
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vfeuilla
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First reco workflow
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Bugs in reco tree
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[ITS-GPU] Fix warning in CI
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mconcas
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Class to hold a bracket of InteractionRecords

shahor02
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ITS tracking will produce output with reconstructed IRFrames (IR brackets)
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Attach IRFrame to RecoContainer and InputHelper
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shahor02
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Corrected bug in Energy decoding
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Add unassigned tracks as last entry of Vtx to Track refs
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shahor02
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Inclusion of CosTheta variable in the helicity reference frame (#6261)
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Generate header providing build-time ENABLE_UPGRADES status
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shahor02
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DPL Analysis: avoid instantiating HistogramRegistry functions per histogram name (#6323)
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mario-krueger
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StepTHn: dont instantiate heavy heavy part of Fill() for each template (#6327)
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mario-krueger
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Leave matched tracks at X last update point
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shahor02
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Relate prim.tracks candidates to meanVertex applying mat.corr.

shahor02
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fix in cascades casuality cuts, store cosPA

shahor02
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FITRaw: common digit2raw procedure is applied(implemented only for FV0) (#6322)
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afurs
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o2-sim: more shutdown improvements
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sawenzel
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Some higher level filesystem utility
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sawenzel
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Apply misalignment after building geometry in o2sim (#6329)
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shahor02
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GPU Display: improve configuration

davidrohr
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DPL Analysis: extern declaration for common table types (#6288)
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ktf
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TDC calibration object
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FST: Make GPU memory size settable in FST

davidrohr
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GPU: Enforce the CUDA Architecture we set, otherwise some other CMake module might override it

davidrohr
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PID: Check that the TOF exp mom is positive (#6280)

njacazio
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o2-sim: Stability fix
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sawenzel
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use configurable parameters for MCH clustering

pillot
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ccdbHost for reconstruction + bux fixes
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alibuild
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Correcting whitespaces
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Enable debug output/printout from command line
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alibuild
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Corrections
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alibuild
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Configuration parameters for reconstruction
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Configuration parameters for reconstruction - bug fixes
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alibuild
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Configuration parameters for reconstruction - bug fixes
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fixes

shahor02
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Energy and Tower calibration
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alibuild
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Inclusion of Energy and Tower calibration objects
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Energy calibration and tower intercalibration in reconstruction
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2ce5fbb
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Correcting tabs
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d7bad60
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Merging
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Whitespaces
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Revert "Correcting tabs"
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Correcting tabs and printout for lonely bunches
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Correcting tabs and printout for lonely bunches
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Commits on Jun 11, 2021