Reference

microshades_palettes

List of palettes

microshades_cvd_palettes

List of CVD palettes

microshades_palette()

Microshades sequential color shading palette accessor

default_hex()

Return default hex colors

prep_mdf()

Prepare melted phyloseq object to map colors to

create_color_dfs()

Generates abundance sorted data frame and a color palette data frame

reorder_samples_by()

Reorder the samples or stacked group levels by abundance

match_cdf()

Apply the color factoring from one cdf to a different melted data frame

color_reassign()

Reassign the microshades colors to different groups

extend_group()

Extends the number of subgroups shown for one particular group by adding additional colors.

plot_microshades()

Plot the mdf created with the microshades package

plot_contributions()

Creates median and mean abundance barplots, and boxplots for microshades taxa contribution plots keeping colors consistent in the microshades stacked barplots

custom_legend()

Create a custom legend